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LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345]
Graphical summary
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List of domain hits
LuxR_C_like
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ...
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# TTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAENIG--------EESLTSRELEVLHLI <font color=#
<font color=# TAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPsssaeaplAELLTPRELEVLRLL <font color=#
....*....|....*....|....*....|....*....|....*....|.
<font color=# RDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRGLLQI <font color=#
<font color=# AEGLSNKEIAEELNLSEKTVKTHVSNILRKLGVRNRTEAAIRALRLGLIEA <font color=#
LuxR_C_like
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ...
Response_reg
Response regul This domain receives the signal from the sensor partner in ...
....*....|....*....|....*....|...
<font color=# SDSHTEIDRALRAGAAAYILKSMPMNEMLAVIR <font color=#
<font color=# HGDEEDAVEALKAGANDFLSKPFDPEELLAALR <font color=#
helix_turn_helix, Lux R lux regulon (activates the bioluminescence operon
Bacterial regulatory proteins, luxR
FOG: CheY-like receiver [Signal transduction mechanisms]
....*....|....*....|....*....|....*....|....*....
<font color=# RVIILTTSDSHTEIDRALRAGAAAYILK-SMPMNEMLAVIRSVHAGARH <font color=#
<font color=# PVILLTAYADEADRERALAAGADDYLTKpIFLEEELLAALRRLLARAAA <font color=#
DNA-binding HTH domain-containing proteins [Transcription]
cheY-homolo CheY regulates the clockwise rotation of E. coli flagellar ...
chemotaxis regulatory protein CheY; Provisional
....*....|....*....|....*....
<font color=# ARVIILTTSDSHTEIDRALRAGAAAYILK <font color=#
<font color=# LPVLMVTAEAKKENIIAAAQAGASGYVVK <font color=#
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# TTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAENIG--------EESLTSRELEVLHLI <font color=#
<font color=# TAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPsssaeaplAELLTPRELEVLRLL <font color=#
....*....|....*....|....*....|....*....|....*....|.
<font color=# RDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRGLLQI <font color=#
<font color=# AEGLSNKEIAEELNLSEKTVKTHVSNILRKLGVRNRTEAAIRALRLGLIEA <font color=#
transcriptional regulator NarL; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# TSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAENIGEE---------SLTSRELEVLHLI <font color=#
<font color=# VSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANratterdvnQLTPRERDILKLI <font color=#
....*....|....*....|....*....|....*....|....*.
<font color=# RDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRR <font color=#
<font color=# AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE <font color=#
phosphate regulon transcriptional regulatory protein PhoB; PhoB is a DNA-binding response ...
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# ILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARhiPQEVASRLaeNIGEesltsrelevLHLIRDGHRN <font color=#
<font color=# MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIR--PQLSDEVI--EVGD----------LSLDPVAHRV <font color=#
....*....|..
<font color=# KQIADELSISET <font color=#
<font color=# FRGGQPLSLGPT <font color=#
Ycf27; Reviewed
....*....|....*....|....*....|....*....|.
<font color=# VIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSV <font color=#
<font color=# IIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSV <font color=#
LuxR_C_like
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ...
Response_reg
Response regul This domain receives the signal from the sensor partner in ...
....*....|....*....|....*....|...
<font color=# SDSHTEIDRALRAGAAAYILKSMPMNEMLAVIR <font color=#
<font color=# HGDEEDAVEALKAGANDFLSKPFDPEELLAALR <font color=#
helix_turn_helix, Lux R lux regulon (activates the bioluminescence operon
Bacterial regulatory proteins, luxR
FOG: CheY-like receiver [Signal transduction mechanisms]
....*....|....*....|....*....|....*....|....*....
<font color=# RVIILTTSDSHTEIDRALRAGAAAYILK-SMPMNEMLAVIRSVHAGARH <font color=#
<font color=# PVILLTAYADEADRERALAAGADDYLTKpIFLEEELLAALRRLLARAAA <font color=#
DNA-binding HTH domain-containing proteins [Transcription]
cheY-homolo CheY regulates the clockwise rotation of E. coli flagellar ...
chemotaxis regulatory protein CheY; Provisional
....*....|....*....|....*....
<font color=# ARVIILTTSDSHTEIDRALRAGAAAYILK <font color=#
<font color=# LPVLMVTAEAKKENIIAAAQAGASGYVVK <font color=#
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# TTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAENIG--------EESLTSRELEVLHLI <font color=#
<font color=# TAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPsssaeaplAELLTPRELEVLRLL <font color=#
....*....|....*....|....*....|....*....|....*....|.
<font color=# RDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRGLLQI <font color=#
<font color=# AEGLSNKEIAEELNLSEKTVKTHVSNILRKLGVRNRTEAAIRALRLGLIEA <font color=#
transcriptional regulator NarL; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# TSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAENIGEE---------SLTSRELEVLHLI <font color=#
<font color=# VSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANratterdvnQLTPRERDILKLI <font color=#
....*....|....*....|....*....|....*....|....*.
<font color=# RDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRR <font color=#
<font color=# AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE <font color=#
two component system sensor kinase SsrB; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# ILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHI------PQEVASRLAENIGEESLTSRELEVLHLI <font color=#
<font color=# VLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIdpalnrEAILALLNADDTNPPLLTPRERQILKLI <font color=#
....*....|....*....|....*....|....*....|....*....
<font color=# RDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRGLL <font color=#
<font color=# TEGYTNRDIAEQLSISIKTVETHRLNMMRKLDVHKVAELLNWARRLGLI <font color=#
transcriptional regulator NarP; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# TSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAENIGEES-------LTSRELEVLHLIRD <font color=#
<font color=# VSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAeedpfsvLTERELDVLHELAQ <font color=#
....*....|....*....|....*....|....*..
<font color=# GHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHA <font color=#
<font color=# GLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA <font color=#
Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# TTsdsHTE---IDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAENIGE-------ESLTSRELEVLH <font color=#
<font color=# TV---HTEnplPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEpatenpfASLSERELQIML <font color=#
....*....|....*....|....*....|....*....|....*....|.
<font color=# LIRDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRGLL <font color=#
<font color=# MITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGLL <font color=#
DNA-binding transcriptional activator UhpA; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# LTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAENiGEESLTSRELEVLHLIRDGHRNK <font color=#
<font color=# LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASG-RQDPLTKRERQVAEKLAQGMAVK <font color=#
....*....|....*....|....*....
<font color=# QIADELSISETTVNFHIKNIVGKMG-AND <font color=#
<font color=# EIAAELGLSPKTVHVHRANLMEKLGvSND <font color=#
Response regulator [Signal transduction mechanisms]
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# HTEID---RALRAGAAAYILKSMPMNEMLAVIRSvhAGARHIPQEVASRLAENIGE--ESLTSRELEVLHLIRDGHRNKQ <font color=#
<font color=# HGDIPmavQAMKAGAVDFLEKPFSEQDLLDAVER--ALARDASRRAEADRQAAIRArlATLTPRERQVLDLVVRGLMNKQ <font color=#
....*....|....*....|....*....|....*....|
<font color=# IADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRGL <font color=#
<font color=# IAFDLGISERTVELHRANVMEKMQARSLAELVRMALSLGL <font color=#
DNA-binding transcriptional activator EvgA; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# HTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIP----QEVASRLAENIGEESLTSRELEVLHLIRDGHRNKQI <font color=#
<font color=# HFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPfslnRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDI <font color=#
....*....|....*....|....*....|....*....
<font color=# ADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRGL <font color=#
<font color=# AEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI <font color=#
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# LTtsdSHTEID---RALRAGAAAYILKsmPMNEmlAVIrsvhagarhipQEVASRLAENIGEESLTSRELE-VLHLIRDG <font color=#
<font color=# LS---GYDEFEyakKAMKLGVKDYLLK--PVDK--AEL-----------EEALKKIIGKLEEQQKVKQDIEkLLTLLIGH <font color=#
....*....|.
<font color=# HRNKQIADELS <font color=#
<font color=# EPLEELAKKIY <font color=#
transcriptional regulator FimZ; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# ILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAEN------IGEESLTSRELEVLHLI <font color=#
<font color=# FLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNkcstnsSTDTVLSNREVTILRYL <font color=#
....*....|....*....|....*....|...
<font color=# RDGHRNKQIADELSISETTVNFHIKNIVGKMGA <font color=#
<font color=# VSGLSNKEIADQLLLSNKTVSAHKSNIYGKLGL <font color=#
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding ...
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# TTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSV---HAGARHIPQE-----------VASRLAENIGEE-SLTSRE <font color=#
<font color=# TARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALlrrNAGASRAEASevlvfgdltldPDTRTVTLNGRElTLTPKE <font color=#
....*....|....*....|....*....|....*....|....*....|....*....|...
<font color=# LEVLH-LIRdgHRNK-----QIADEL-----SISETTVNFHIKNIVGKMGANDRTHAVTIAVR <font color=#
<font color=# FELLElLAR--HPGRvlsreQLLEAVwgydfEVDSRTVDVHISRLRKKLEKDPGAGRLIRTVR <font color=#
response regulator FixJ; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# SHTEID---RALRAGAAAYILKSMPMNEMLAVIRSV------HAGARHIPQEVASRLAenigeeSLTSRELEVLHLIRDG <font color=#
<font color=# GHGDVPlavEAMKLGAVDFIEKPFEDERLIGAIERAlaqapeAAKSEAVAADIRARIA------SLSERERQVMDGLVAG <font color=#
....*....|....*....|....*....|....*....|....*.
<font color=# HRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRGLL <font color=#
<font color=# LSNKVIARDLDISPRTVEVYRANVMTKMQAGSLSELVRMALRAGRG <font color=#
acetoacetate metabolism regulatory protein AtoC; Provisional
....*....|....*....|....*....|....*....|....*....|....*.
<font color=# TSDSHTEIDRALRAGAAAYILKSMPMNEMLAVI------RSVHAGARHIPQEVASR <font color=#
<font color=# AYAEVETAVEALRCGAFDYVIKPFDLDELNLIVqralqlQSMKKEIRHLHQALSTS <font color=#
ATP-dependent transcriptional regulator [Transcription]
chemotaxis-spe Provisional
....*....|....*....|....*....
<font color=# II---LTTSDSHTEIdRALRAGAAAYILK <font color=#
<font color=# VMvssLTERGAEITL-RALELGAVDFVTK <font color=#
phosphate regulon transcriptional regulatory protein PhoB; PhoB is a DNA-binding response ...
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# ILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARhiPQEVASRLaeNIGEesltsrelevLHLIRDGHRN <font color=#
<font color=# MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIR--PQLSDEVI--EVGD----------LSLDPVAHRV <font color=#
....*....|..
<font color=# KQIADELSISET <font color=#
<font color=# FRGGQPLSLGPT <font color=#
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
....*....|....*....|....*....|....*....
<font color=# VIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIR <font color=#
<font color=# VIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVE <font color=#
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase ...
....*....|....*....|....*
<font color=# --TTSDSHTEIDRALRAGAAAYILK <font color=#
<font color=# ssLTEEGAEATLEALELGAVDFIAK <font color=#
Response regulator of citrate/malate metabolism [Transcription / Signal transduction ...
....*....|....*....|....
<font color=# TTSDSHTE-IDRALRAGAAAYILK <font color=#
<font color=# ITAASDMEtIKEALRYGVVDYLIK <font color=#
chemotaxis-spe Provisional
....*....|....*...
<font color=# TTSDSHTEID-RALRAGA <font color=#
<font color=# SLTERNASRVfEAMGAGA <font color=#
Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# --ILTTSDSHTEI-DRALRAGAAAYILKSMPMNEMLAVIRS-----------VHAGARHIPQEVASRLAENIGEESLTSR <font color=#
<font color=# pvILLTAYADSEDrQRALEAGADDYLSKPISPKELVARVSShlqlkrnedflLDQNLYLELQELRRRTEELAQIEDNLDE <font color=#
....*....|....*....|....*....|....*....|....*....|....*....|..
<font color=# ELEVL-------------HLIRDGHRNKQIADELSISETTVNfHIKNI-----VGKMGANDR <font color=#
<font color=# TLEELaallevrdyetgdHLERVAQYSELLAELLGLSEEEVD-LIKKAaplhdIGKVAIPDS <font color=#
sporulation transcription factor Spo0A; Spo0A, the stage 0 sporulation protein A, is a ...
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
<font color=# VIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAENIGEESLTSRELEVLHLIRD <font color=#
<font color=# VIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWGTNADILADSPTVPPASHAAKTKDLEAEITNIIHE <font color=#
transcriptional regulator MalT; Provisional
transcriptional regulator RcsB; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# VIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVaSRLAENI-----GEESLTSRELEVLHL <font color=#
<font color=# IIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESV-SRLLEKIsaggyGDKRLSPKESEVLRL <font color=#
....*....|....*....|....*....|....*.
<font color=# IRDGHRNKQIADELSISETTVNFHIKNIVGKMGAND <font color=#
<font color=# FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVEN <font color=#
cztR_silR_copR
heavy meta Members of this family contain a response regulator receiver ...
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# LTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVAS-----------RLAENIGEESLTSRELEV <font color=#
<font color=# LTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSHSLNSTVLEiadlrmdsvrhRVSRGNIRITLTRKEFQL <font color=#
....*....|....*....|....*....|....*....|....*....|
<font color=# LHLIRdgHRNKQIadelsISETTvnfhIKNIVGKMGANDRTHAVTIAVRR <font color=#
<font color=# LWLLM--RRTGEV-----LPRTV----IASLVWGMNFDSDTNVVDVAIRR <font color=#
transcriptional regulator EpsA; Proteins in this family include a C-terminal LuxR ...
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# ILKSMpMNEMLAVIRSVHAGARHIPQEVasrLAENIGEESLTSRELEVLHLIRDGHRNKQIADELSISETTVNFHIKNIV <font color=#
<font color=# FLELL-LPYLDSALRRVLFLPNQHRTRP---LGERHSAGLITAREAEILAWVRDGKTNEEIAAILGISSLTVKNHLQHIF <font color=#
....*....|....*..
<font color=# GKMGANDRTHAVTIAVR <font color=#
<font color=# KKLDVRNRAQAVAKAIA <font color=#
Ycf27; Reviewed
....*....|....*....|....*....|....*....|.
<font color=# VIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSV <font color=#
<font color=# IIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSV <font color=#
putative two-component response-regulatory protein YehT; Provisional
....*....|....*....|....*.
<font color=# TTSDSHteidrALRA---GAAAYILK <font color=#
<font color=# TAFDEY-----AIKAfeeHAFDYLLK <font color=#
DNA-binding transcriptional regulator BaeR; Provisional
....*....|....*....|....*....|....*....|...
<font color=# vIILTTSDSHtEIDR--ALRAGAAAYILKSMPMNEMLAVIRSV <font color=#
<font color=# -IVMVTAKIE-EIDRllGLEIGADDYICKPYSPREVVARVKTI <font color=#
transcriptional regulatory protein ZraR; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|...
<font color=# ARVIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAENIG <font color=#
<font color=# IPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDAETPAVTASQFG <font color=#
DNA-binding transcriptional regulator QseB; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# IILTTSDSHTEIDRALRAGAAAYILKSMPMNEML----AVIRSVHAGA----RH--IPQEVASRLAENIGEE-SLTSREL <font color=#
<font color=# LILTARDALAERVEGLRLGADDYLCKPFALIEVAarleALMRRTNGQAsnelRHgnVMLDPGKRIATLAGEPlTLKPKEF <font color=#
....*....|....*....|....*....|....*....|....*....
<font color=# EVLHLI-RDGHR---NKQIADEL-----SISETTVNFHIKNIVGKMGAN <font color=#
<font color=# ALLELLmRNAGRvlpRKLIEEKLytwdeEVTSNAVEVHVHHLRRKLGSD <font color=#
response regulator of RpoS; Provisional
DNA-binding transcriptional activator SdiA; Provisional
....*....|....*....|....*....|....*....|....*....|...
<font color=# LHLIRDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRGLL <font color=#
<font color=# LKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI <font color=#
nitrogen regulation protein NR(I); Provisional
....*....|....*....|....*....|...
<font color=# MLAVI-RSV-HAGARHIP--QEVASRLAENIGE <font color=#
<font color=# AVALVeRAIsHYQEQQQPrnIQVNGPTTDIIGE <font color=#
DNA-binding transcriptional regulator CsgD; Provisional
Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
....*....|....*....|....*.
<font color=# TTSDshteiDRALRA---GAAAYILK <font color=#
<font color=# TAHD-----EYAVAAfevEALDYLLK <font color=#
DNA-binding transcriptional regulator BasR; Provisional
....*....|....*....|....*....|....*.
<font color=# TTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRS <font color=#
<font color=# TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRA <font color=#
DNA-binding transcriptional regulator PhoP; Provisional
....*....|....*....|....*....|....*....|
<font color=# IILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSV <font color=#
<font color=# LVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL <font color=#
reg_near_HchA
LuxR family transcriptional regulatory, chaperone HchA- Members of this protein ...
DNA-binding response regulator CreB; Provisional
....*....|....*....|....*....|....*...
<font color=# TSDShtEIDR--ALRAGAAAYILKSMPMNEMLAVIRSV <font color=#
<font color=# ARSD--EVDRlvGLEIGADDYVAKPFSPREVAARVRTI <font color=#
TMAO reductase sytem sensor TorS; This protein, TorS, is part of a regulatory system for the ...
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
<font color=# RVIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHipQEVASRLAENIGEESLTSRELE <font color=#
<font color=# KFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAGGKS--NTEAPVLSASPSFDSASVIENA <font color=#
Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
....*....|....*....|....
<font color=# LTTSDSHTEIDRALRAGAAAYILK <font color=#
<font color=# LTAYSDPALIEAAIEAGVMAYIVK <font color=#
DNA-binding transcriptional regulator RstA; Provisional
....*....|....*....|....*....|....*....|....*....|..
<font color=# TSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRsVH---AGARHIPQEVAS <font color=#
<font color=# SLDSDMNHILALEMGACDYILKTTPPAVLLARLR-LHlrqNEQATQTKGLQE <font color=#
transcriptional regulator PhoB; Provisional
....*....|....*....|....*....|....*....|....
<font color=# rarVIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSV <font color=#
<font color=# ---VVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV <font color=#
two component system sensor kinase SsrA; Provisional
....*....|....*....|....*....|....
<font color=# GEFPRARVIILTTSDSHTEIDRALRAGAAAYILK <font color=#
<font color=# NLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTK <font color=#
Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal ...
....*....|....*....|....*....|....*.
<font color=# LTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIR <font color=#
<font color=# LSSKDDDELVVRAFELGVNDYITKPIEEGELRARLR <font color=#
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ...
....*....|....*....|....*....|...
<font color=# LAVIRSV-----HAGARHIPQEVASRLAENIGE <font color=#
<font color=# VTLVERAlahaqEQVALPADAGEAEDSAELIGE <font color=#
two-componen Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# LTTSDShtEIDR--ALRAGAAAYILKsmPMNEMLAVIRS---VHAGARHIPQEVASRLAEN---------IGEESLTSRE <font color=#
<font color=# LTGRDN--EVDKilGLEIGADDYITK--PFNPRELTIRArnlLSRTMNLGTVSEERRSVESykfngweldINSRSLISPD <font color=#
....*....|....*....|....*....|....*....|....*....|....*....|....
<font color=# LEVLHLIRDGHR----------NKQIADELsisettvnfhIKNIVGK-MGANDRTHAVTIavRR <font color=#
<font color=# GEQYKLPRSEFRamlhfcenpgKIQSRAEL----------LKKMTGReLKPHDRTVDVTI--RR <font color=#
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal ...
....*....|....*....
<font color=# EMLAVIRSVHAGARHIPQE <font color=#
<font color=# DILAALLRREPDEDTAPPE <font color=#
PEP_resp_reg
PEP-CTERM-box response regulator
Members of this protein family share ...
....*....|....*.
<font color=# SMPMNEM-LAVIRSVH <font color=#
<font color=# PIDPDVLkLIVDRAFH <font color=#
transcriptional regulatory protein YedW; Provisional
....*....|....*....|....*....|....*.
<font color=# TTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRS <font color=#
<font color=# TARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRA <font color=#
marine_sort_RR
proteobacterial dedicated sortase syste This model describes a family of ...
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# LTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVI----RSVHAGARHIPQEVASR---LAENIGEES---------LTS <font color=#
<font color=# LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARItalfRRAEALQKPQKQDDLITrgpLTLDSDRMTvfwqdqpidLTV <font color=#
....*....|....*....|....*....|....*....|....*....|
<font color=# RELEVLHLI--RDGH-RNK-QIADELSI--SETTVNFHIKNIVGKMGAND <font color=#
<font color=# TEFWMVHALakHPGHvKSRqQLMDAAKIvvDDSTITSHIKRIRKKFQAVD <font color=#
Sig70_bacteroi1
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ...
DNA-binding transcriptional activator CusR; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# TTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRS-VHAGARHIPQ----------EVASRLAENIGEE-SLTSRELEV <font color=#
<font color=# TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTlLRRGAAVIIEsqfqvadlmvDLVSRKVTRSGTRiTLTSKEFTL <font color=#
....*....|....*....|....*....|....*....|....*....|.
<font color=# LH-LIRdgHRNKQIADELSISEttvnfhikniVGKMGANDRTHAVTIAVRR <font color=#
<font color=# LEfFLR--HQGEVLPRSLIASQ----------VWDMNFDSDTNAIDVAVKR <font color=#
hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
....*....|....*....|....*....|....*....|....*....|....*
80 FPRARVIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQ <font color=#
<font color=#8 NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQ <font color=#2
DNA-binding transcriptional regulator TorR; Provisional
....*....|....*....|....*....|....*
<font color=# ILTTSDSHTeIDR--ALRAGAAAYILKSMPMNEML <font color=#
<font color=# ILVTGRTDS-IDRivGLEMGADDYVTKPLELRELL <font color=#
DNA-binding transcriptional activator KdpE; Provisional
....*....|....*....|....*....|...
<font color=# SDSHTEIDRALRAGAAAYILKSMPMNEMLAVIR <font color=#
<font color=# RSEESDKIAALDAGADDYLSKPFGIGELQARLR <font color=#
transcriptional regulatory protein TctD; Provisional
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
<font color=# TTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVaSRLAENIGEE-----------SLTSRELEVL <font color=#
<font color=# TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVQEV-QQLGELIFHDegyfllqgqplALTPREQALL <font color=#
<font color=# H <font color=#
<font color=# T <font color=#
hybrid sensory histidine kinase BarA; Provisional
<font color=# E-ML <font color=#
<font color=# EaML <font color=#
two-componen Provisional
....*....|..
<font color=# GEFPrARVIILT <font color=#
<font color=# KTFD-VPVIFIT <font color=#
osmolarit Provisional
....*....|....*....|....*....|....*...
<font color=# TSDShtEIDR--ALRAGAAAYILKSMPMNEMLAVIRSV <font color=#
<font color=# AKGE--EVDRivGLEIGADDYLPKPFNPRELLARIRAV <font color=#
hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
DNA-binding transcriptional regulator CpxR; Provisional
....*....|....*....|....*....|....*....|..
<font color=# IILTTSDShtEIDR--ALRAGAAAYILKSMPMNEMLAVIRSV <font color=#
<font color=# IMLTARGS--ELDRvlGLELGADDYLPKPFNDRELVARIRAI <font color=#
response regulator GlrR; Provisional
....*....|....*....|....*....|....*....|.
<font color=# RARVIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVI <font color=#
<font color=# GMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAI <font color=#
response regulator PleD; Reviewed
....*....|...
<font color=# PMNE--MLAVIRS <font color=#
<font color=# PINDvaLFARVKS <font color=#
bacterio- Provisional
....*....|....*....|....*.
<font color=# RVIILTTSDSHTEIDRALRAGAAAYI <font color=#
<font color=# PVVVVPTAGDEAVARRAVDADAAAYV <font color=#
References:
Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.
Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
&of the residues that compose this conserved feature have been mapped to the query sequence.
Click on the triangle to view details about the feature, including a multiple sequence alignment
of your query sequence and the protein sequences used to curate the domain model,
where hash marks (#) above the aligned sequences show the location of the conserved feature residues.
The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions.
Click on the triangle for interactive 3D structure viewing options.
This image shows a graphical summary of conserved domains identified on the query sequence.
The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: &only top scoring hits
() or all hits
Domains are color coded according to
to which they have been assigned.
Hits with scores that pass a domain-specific threshold
() are drawn in bright colors.
Others () and
placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (),
they are mapped to the query sequence and indicated through sets of
with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features.
click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
Click on the domain model's
to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.
To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
or click on the triangles, if present, that represent functional sites ()
mapped to the query sequence.
Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance.
can be shown, as available,
for each region on the query sequence:
meet or exceed a domain-specific e-value threshold
and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the
the domain
to which the specific and non-specific hits belong
models that were computationally detected and are likely to contain multiple single domains
provides more detail about the tool and its features.
Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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